Lee, Juyong
Lee, Juyong
Department of Chemistry, Kangwon National University, South Korea
Verified email at kangwon.ac.kr - Homepage
Title
Cited by
Cited by
Year
Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms
B Manavalan, J Lee, J Lee
PloS one 9 (9), e106542, 2014
652014
Modularity optimization by conformational space annealing
J Lee, SP Gross, J Lee
Physical Review E 85 (5), 056702, 2012
622012
Constant pH molecular dynamics in explicit solvent with enveloping distribution sampling and Hamiltonian exchange
J Lee, BT Miller, A Damjanovic, BR Brooks
Journal of Chemical Theory and Computation 10 (7), 2738–2750, 2014
512014
De novo protein structure prediction by dynamic fragment assembly and conformational space annealing
J Lee, J Lee, TN Sasaki, M Sasai, C Seok, J Lee
Proteins: Structure, Function, and Bioinformatics 79 (8), 2403-2417, 2011
482011
Protein structure modeling for CASP10 by multiple layers of global optimization
K Joo, J Lee, S Sim, SY Lee, K Lee, S Heo, IH Lee, SJ Lee, J Lee
Proteins: Structure, Function, and Bioinformatics 82, 188-195, 2014
422014
A statistical rescoring scheme for protein–ligand docking: Consideration of entropic effect
J Lee, C Seok
Proteins: Structure, Function, and Bioinformatics 70 (3), 1074-1083, 2008
412008
Improved network community structure improves function prediction
J Lee, SP Gross, J Lee
Scientific Reports 3, 02197, 2013
372013
LigDockCSA: Protein–ligand docking using conformational space annealing
WH Shin, L Heo, J Lee, J Ko, C Seok, J Lee
Journal of Computational Chemistry 32 (15), 3226–3232, 2011
372011
What stabilizes close arginine pairing in proteins?
D Lee, J Lee, C Seok
Phys. Chem. Chem. Phys. 15, 5844-5853, 2013
342013
Cooperativity and Specificity of Cys2His2 Zinc Finger Protein−DNA Interactions: A Molecular Dynamics Simulation Study
J Lee, JS Kim, C Seok
The Journal of Physical Chemistry B 114 (22), 7662-7671, 2010
342010
Template based protein structure modeling by global optimization in CASP 11
K Joo, IS Joung, SY Lee, JY Kim, Q Cheng, B Manavalan, JY Joung, ...
Proteins: Structure, Function, and Bioinformatics 84, 221-232, 2016
332016
Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction
J Lee, J Lee
PLoS ONE 8 (4), e60372, 2013
312013
Transition between B-DNA and Z-DNA: Free Energy Landscape for the B− Z Junction Propagation
J Lee, YG Kim, KK Kim, C Seok
The Journal of Physical Chemistry B 114 (30), 9872-9881, 2010
282010
Blind prediction of distribution in the SAMPL5 challenge with QM based protomer and pK a corrections
FC Pickard, G König, F Tofoleanu, J Lee, AC Simmonett, Y Shao, ...
Journal of computer-aided molecular design 30 (11), 1087-1100, 2016
272016
Computational scheme for pH‐dependent binding free energy calculation with explicit solvent
J Lee, BT Miller, BR Brooks
Protein Science 25 (1), 231-243, 2016
272016
Enhancing constant-pH simulation in explicit solvent with a two-dimensional replica exchange method
J Lee, BT Miller, A Damjanovic, BR Brooks
Journal of Chemical Theory and Computation 11 (6), 2560-2574, 2015
262015
Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in …
G König, FC Pickard, J Huang, AC Simmonett, F Tofoleanu, J Lee, ...
Journal of computer-aided molecular design 30 (11), 989-1006, 2016
202016
Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest
J Lee, K Lee, IS Joung, K Joo, BR Brooks, J Lee
BMC bioinformatics 16 (1), 94, 2015
152015
Finding multiple reaction pathways via global optimization of action
J Lee, IH Lee, IS Joung, J Lee, BR Brooks
Nature Communications 8, 15443, 2017
142017
Origin of pKa Shifts of Internal Lysine Residues in SNase Studied Via Equal-Molar VMMS Simulations in Explicit Water
X Wu, J Lee, BR Brooks
The Journal of Physical Chemistry B 121 (15), 3318-3330, 2017
142017
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Articles 1–20