Roger D. Kouyos
Roger D. Kouyos
University of Zurich; University Hospital Zurich
Verified email at uzh.ch
TitleCited byYear
Population biological principles of drug-resistance evolution in infectious diseases
PA zur Wiesch, R Kouyos, J Engelstädter, RR Regoes, S Bonhoeffer
The Lancet infectious diseases 11 (3), 236-247, 2011
1742011
Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland
RD Kouyos, V Von Wyl, S Yerly, J Böni, P Taffé, C Shah, P Börgisser, ...
The Journal of infectious diseases 201 (10), 1488-1497, 2010
1532010
Epistasis between deleterious mutations and the evolution of recombination
RD Kouyos, OK Silander, S Bonhoeffer
Trends in ecology & evolution 22 (6), 308-315, 2007
1432007
Estimating the basic reproductive number from viral sequence data
T Stadler, R Kouyos, V von Wyl, S Yerly, J Böni, P Bürgisser, T Klimkait, ...
Molecular biology and evolution 29 (1), 347-357, 2011
1412011
The state of affairs in the kingdom of the Red Queen
M Salathé, RD Kouyos, S Bonhoeffer
Trends in ecology & evolution 23 (8), 439-445, 2008
1412008
Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance
MH Powdrill, EP Tchesnokov, RA Kozak, RS Russell, R Martin, ...
Proceedings of the National Academy of Sciences 108 (51), 20509-20513, 2011
1352011
Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection
RD Kouyos, V von Wyl, S Yerly, J Böni, P Rieder, B Joos, P Taffé, C Shah, ...
Clinical infectious diseases 52 (4), 532-539, 2011
1152011
Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load
S Alizon, V von Wyl, T Stadler, RD Kouyos, S Yerly, B Hirschel, J Böni, ...
PLoS pathogens 6 (9), e1001123, 2010
1092010
Stochastic or deterministic: what is the effective population size of HIV-1?
RD Kouyos, CL Althaus, S Bonhoeffer
Trends in microbiology 14 (12), 507-511, 2006
1062006
Exploring the complexity of the HIV-1 fitness landscape
RD Kouyos, GE Leventhal, T Hinkley, M Haddad, JM Whitcomb, ...
PLoS genetics 8 (3), e1002551, 2012
922012
Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 …
A Cozzi-Lepri, M Noguera-Julian, F Di Giallonardo, R Schuurman, ...
Journal of antimicrobial chemotherapy 70 (3), 930-940, 2014
892014
Inferring epidemic contact structure from phylogenetic trees
GE Leventhal, R Kouyos, T Stadler, V Von Wyl, S Yerly, J Böni, C Cellerai, ...
PLoS computational biology 8 (3), e1002413, 2012
812012
Determinants of HIV-1 broadly neutralizing antibody induction
P Rusert, RD Kouyos, C Kadelka, H Ebner, M Schanz, M Huber, DL Braun, ...
Nature medicine 22 (11), 1260, 2016
722016
The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland
V von Wyl, RD Kouyos, S Yerly, J Böni, C Shah, P Bürgisser, T Klimkait, ...
Journal of infectious diseases 204 (7), 1095-1103, 2011
702011
Bottleneck-induced transitions in a minimal model for intracellular transport
P Pierobon, M Mobilia, R Kouyos, E Frey
Physical Review E 74 (3), 031906, 2006
692006
Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study
SM Drescher, V von Wyl, WL Yang, J Böni, S Yerly, C Shah, V Aubert, ...
Clinical infectious diseases 58 (2), 285-294, 2013
682013
Rapid parasite adaptation drives selection for high recombination rates
M Salathé, RD Kouyos, RR Regoes, S Bonhoeffer
Evolution: International Journal of Organic Evolution 62 (2), 295-300, 2008
652008
The path of least resistance: aggressive or moderate treatment?
RD Kouyos, CJE Metcalf, R Birger, EY Klein, P Abel zur Wiesch, ...
Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20140566, 2014
592014
Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection
DL Braun, RD Kouyos, B Balmer, C Grube, R Weber, HF Günthard
Clinical Infectious Diseases 61 (6), 1013-1021, 2015
582015
Effect of varying epistasis on the evolution of recombination
RD Kouyos, SP Otto, S Bonhoeffer
Genetics 173 (2), 589-597, 2006
562006
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Articles 1–20