| Population biological principles of drug-resistance evolution in infectious diseases PA Zur Wiesch, R Kouyos, J Engelstädter, RR Regoes, S Bonhoeffer The Lancet infectious diseases 11 (3), 236-247, 2011 | 216 | 2011 |
| Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland RD Kouyos, V Von Wyl, S Yerly, J Böni, P Taffé, C Shah, P Börgisser, ... The Journal of infectious diseases 201 (10), 1488-1497, 2010 | 178 | 2010 |
| Estimating the basic reproductive number from viral sequence data T Stadler, R Kouyos, V von Wyl, S Yerly, J Böni, P Bürgisser, T Klimkait, ... Molecular biology and evolution 29 (1), 347-357, 2012 | 177 | 2012 |
| Epistasis between deleterious mutations and the evolution of recombination RD Kouyos, OK Silander, S Bonhoeffer Trends in ecology & evolution 22 (6), 308-315, 2007 | 157 | 2007 |
| Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance MH Powdrill, EP Tchesnokov, RA Kozak, RS Russell, R Martin, ... Proceedings of the National Academy of Sciences 108 (51), 20509-20513, 2011 | 155 | 2011 |
| The state of affairs in the kingdom of the Red Queen M Salathé, RD Kouyos, S Bonhoeffer Trends in Ecology & Evolution 23 (8), 439-445, 2008 | 153 | 2008 |
| Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection RD Kouyos, V von Wyl, S Yerly, J Böni, P Rieder, B Joos, P Taffé, C Shah, ... Clinical infectious diseases 52 (4), 532-539, 2011 | 136 | 2011 |
| Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load S Alizon, V von Wyl, T Stadler, RD Kouyos, S Yerly, B Hirschel, J Böni, ... PLoS Pathog 6 (9), e1001123, 2010 | 123 | 2010 |
| Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 … A Cozzi-Lepri, M Noguera-Julian, F Di Giallonardo, R Schuurman, ... Journal of antimicrobial chemotherapy 70 (3), 930-940, 2015 | 120 | 2015 |
| Stochastic or deterministic: what is the effective population size of HIV-1? RD Kouyos, CL Althaus, S Bonhoeffer Trends in microbiology 14 (12), 507-511, 2006 | 114 | 2006 |
| Exploring the complexity of the HIV-1 fitness landscape RD Kouyos, GE Leventhal, T Hinkley, M Haddad, JM Whitcomb, ... PLoS Genet 8 (3), e1002551, 2012 | 109 | 2012 |
| Determinants of HIV-1 broadly neutralizing antibody induction P Rusert, RD Kouyos, C Kadelka, H Ebner, M Schanz, M Huber, DL Braun, ... Nature medicine 22 (11), 1260-1267, 2016 | 106 | 2016 |
| Inferring epidemic contact structure from phylogenetic trees GE Leventhal, R Kouyos, T Stadler, V Von Wyl, S Yerly, J Böni, C Cellerai, ... PLoS Comput Biol 8 (3), e1002413, 2012 | 100 | 2012 |
| Prolonged persistence of measles virus RNA is characteristic of primary infection dynamics WHW Lin, RD Kouyos, RJ Adams, BT Grenfell, DE Griffin Proceedings of the National Academy of Sciences 109 (37), 14989-14994, 2012 | 85 | 2012 |
| The path of least resistance: aggressive or moderate treatment? RD Kouyos, CJE Metcalf, R Birger, EY Klein, P Abel zur Wiesch, ... Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20140566, 2014 | 82 | 2014 |
| Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection DL Braun, RD Kouyos, B Balmer, C Grube, R Weber, HF Günthard Clinical Infectious Diseases 61 (6), 1013-1021, 2015 | 80 | 2015 |
| Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study SM Drescher, V von Wyl, WL Yang, J Böni, S Yerly, C Shah, V Aubert, ... Clinical infectious diseases 58 (2), 285-294, 2014 | 80 | 2014 |
| The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland V von Wyl, RD Kouyos, S Yerly, J Böni, C Shah, P Bürgisser, T Klimkait, ... Journal of infectious diseases 204 (7), 1095-1103, 2011 | 80 | 2011 |
| Bottleneck-induced transitions in a minimal model for intracellular transport P Pierobon, M Mobilia, R Kouyos, E Frey Physical Review E 74 (3), 031906, 2006 | 77 | 2006 |
| Rapid parasite adaptation drives selection for high recombination rates M Salathé, RD Kouyos, RR Regoes, S Bonhoeffer Evolution: International Journal of Organic Evolution 62 (2), 295-300, 2008 | 71 | 2008 |
