Roger D. Kouyos
Roger D. Kouyos
University of Zurich; University Hospital Zurich
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Cited by
Cited by
Population biological principles of drug-resistance evolution in infectious diseases
PA Zur Wiesch, R Kouyos, J Engelstädter, RR Regoes, S Bonhoeffer
The Lancet infectious diseases 11 (3), 236-247, 2011
Estimating the basic reproductive number from viral sequence data
T Stadler, R Kouyos, V von Wyl, S Yerly, J Böni, P Bürgisser, T Klimkait, ...
Molecular biology and evolution 29 (1), 347-357, 2012
Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland
RD Kouyos, V Von Wyl, S Yerly, J Böni, P Taffé, C Shah, P Börgisser, ...
The Journal of infectious diseases 201 (10), 1488-1497, 2010
Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance
MH Powdrill, EP Tchesnokov, RA Kozak, RS Russell, R Martin, ...
Proceedings of the National Academy of Sciences 108 (51), 20509-20513, 2011
The state of affairs in the kingdom of the Red Queen
M Salathé, RD Kouyos, S Bonhoeffer
Trends in ecology & evolution 23 (8), 439-445, 2008
Determinants of HIV-1 broadly neutralizing antibody induction
P Rusert, RD Kouyos, C Kadelka, H Ebner, M Schanz, M Huber, DL Braun, ...
Nature medicine 22 (11), 1260-1267, 2016
Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection
RD Kouyos, V von Wyl, S Yerly, J Böni, P Rieder, B Joos, P Taffé, C Shah, ...
Clinical infectious diseases 52 (4), 532-539, 2011
Epistasis between deleterious mutations and the evolution of recombination
RD Kouyos, OK Silander, S Bonhoeffer
Trends in ecology & evolution 22 (6), 308-315, 2007
Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART
N Bachmann, C Von Siebenthal, V Vongrad, T Turk, K Neumann, ...
Nature communications 10 (1), 3193, 2019
Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load
S Alizon, V Von Wyl, T Stadler, RD Kouyos, S Yerly, B Hirschel, J Böni, ...
PLoS pathogens 6 (9), e1001123, 2010
Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 …
A Cozzi-Lepri, M Noguera-Julian, F Di Giallonardo, R Schuurman, ...
Journal of antimicrobial chemotherapy 70 (3), 930-940, 2015
Prolonged persistence of measles virus RNA is characteristic of primary infection dynamics
WHW Lin, RD Kouyos, RJ Adams, BT Grenfell, DE Griffin
Proceedings of the National Academy of Sciences 109 (37), 14989-14994, 2012
Exploring the complexity of the HIV-1 fitness landscape
RD Kouyos, GE Leventhal, T Hinkley, M Haddad, JM Whitcomb, ...
PLoS genetics 8 (3), e1002551, 2012
Stochastic or deterministic: what is the effective population size of HIV-1?
RD Kouyos, CL Althaus, S Bonhoeffer
Trends in microbiology 14 (12), 507-511, 2006
Inferring epidemic contact structure from phylogenetic trees
GE Leventhal, R Kouyos, T Stadler, V Von Wyl, S Yerly, J Böni, C Cellerai, ...
PLoS computational biology 8 (3), e1002413, 2012
Frequency and spectrum of unexpected clinical manifestations of primary HIV-1 infection
DL Braun, RD Kouyos, B Balmer, C Grube, R Weber, HF Günthard
Clinical Infectious Diseases 61 (6), 1013-1021, 2015
The path of least resistance: aggressive or moderate treatment?
RD Kouyos, CJE Metcalf, R Birger, EY Klein, P Abel zur Wiesch, ...
Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20140566, 2014
Hepatitis C virus transmission among human immunodeficiency virus‐infected men who have sex with men: modeling the effect of behavioral and treatment interventions
L Salazar‐Vizcaya, RD Kouyos, C Zahnd, G Wandeler, M Battegay, ...
Hepatology 64 (6), 1856-1869, 2016
Cycling empirical antibiotic therapy in hospitals: meta-analysis and models
P Abel zur Wiesch, R Kouyos, S Abel, W Viechtbauer, S Bonhoeffer
PLoS pathogens 10 (6), e1004225, 2014
Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study
SM Drescher, V von Wyl, WL Yang, J Böni, S Yerly, C Shah, V Aubert, ...
Clinical Infectious Diseases 58 (2), 285-294, 2014
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