Julia Koehler Leman
Julia Koehler Leman
Project Director, Open Molecular Software Foundation
Verified email at
Cited by
Cited by
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature Methods, 1-14, 2020
Structure-based protein function prediction using graph convolutional networks
V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Nature Communications 12 (1), 1-14, 2021
Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects
J Koehler, J Meiler
Progress in nuclear magnetic resonance spectroscopy 59 (4), 360-389, 2011
An integrated framework advancing membrane protein modeling and design
RF Alford, JK Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS Comput Biol 11 (9), e1004398, 2015
Computational modeling of membrane proteins
J Koehler Leman, MB Ulmschneider, JJ Gray
Proteins: Structure, Function, and Bioinformatics 83 (1), 1-24, 2015
Simultaneous prediction of protein secondary structure and transmembrane spans
JK Leman, R Mueller, M Karakas, N Woetzel, J Meiler
Proteins: Structure, Function, and Bioinformatics 81 (7), 1127-1140, 2013
A unified hydrophobicity scale for multispan membrane proteins
J Koehler, N Woetzel, R Staritzbichler, CR Sanders, J Meiler
Proteins: Structure, Function, and Bioinformatics 76 (1), 13-29, 2009
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ...
Genome medicine 9, 1-10, 2017
Structural Model of the Membrane‐Bound C Terminus of Lipid‐Modified Human N‐Ras Protein
G Reuther, KT Tan, J Köhler, C Nowak, A Pampel, K Arnold, J Kuhlmann, ...
Angewandte Chemie International Edition 45 (32), 5387-5390, 2006
Specificity and Speed: Tethered Photopharmacology
P Leippe, J Koehler Leman, D Trauner
Biochemistry 56 (39), 5214-5220, 2017
Lysophospholipid micelles sustain the stability and catalytic activity of diacylglycerol kinase in the absence of lipids
J Koehler, ES Sulistijo, M Sakakura, HJ Kim, CD Ellis, CR Sanders
Biochemistry 49 (33), 7089-7099, 2010
Computational prediction of the heterodimeric and higher-order structure of gpE1/gpE2 envelope glycoproteins encoded by hepatitis C virus
H Freedman, MR Logan, D Hockman, J Koehler Leman, JLM Law, ...
Journal of virology 91 (8), e02309-16, 2017
Expanding the toolkit for membrane protein modeling in Rosetta
J Koehler Leman, BK Mueller, JJ Gray
Bioinformatics 33 (5), 754-756, 2016
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLOS Computational Biology 16 (5), e1007507, 2020
Capturing conformational states in proteins using sparse paramagnetic NMR data
KB Pilla, JK Leman, G Otting, T Huber
PLoS One 10 (5), e0127053, 2015
Improving loop modeling of the antibody complementarity-determining region 3 using knowledge-based restraints
JA Finn, J Koehler Leman, JR Willis, A Cisneros III, JE Crowe Jr, J Meiler
PloS one 11 (5), e0154811, 2016
Integrative protein modeling in RosettaNMR from sparse paramagnetic restraints
G Kuenze, R Bonneau, JK Leman, J Meiler
Structure 27 (11), 1721-1734. e5, 2019
Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP
JK Leman, S Lyskov, R Bonneau
BMC bioinformatics 18 (1), 115, 2017
Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction
OFL Tatjana Braun, Julia Koehler Leman
PloS Computational Biology 11 (12), 2015
Sequence-structure-function relationships in the microbial protein universe
J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ...
Nature Communications 14 (1), 2351, 2023
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