Danny Arends
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Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA
RSN Fehrmann, RC Jansen, JH Veldink, HJ Westra, D Arends, ...
PLoS genetics 7 (8), e1002197, 2011
R/qtl: high-throughput multiple QTL mapping
D Arends, P Prins, RC Jansen, KW Broman
Bioinformatics 26 (23), 2990-2992, 2010
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button
MA Swertz, M Dijkstra, T Adamusiak, JK van der Velde, A Kanterakis, ...
BMC bioinformatics 11 (12), 1-9, 2010
Cell specific eQTL analysis without sorting cells
HJ Westra, D Arends, T Esko, MJ Peters, C Schurmann, K Schramm, ...
PLoS genetics 11 (5), e1005223, 2015
Visualizing the genetic landscape of Arabidopsis seed performance
RVL Joosen, D Arends, LAJ Willems, W Ligterink, RC Jansen, ...
Plant Physiology, 2011
Identifying genotype-by-environment interactions in the metabolism of germinating Arabidopsis seeds using generalized genetical genomics
RVL Joosen, D Arends, Y Li, LAJ Willems, JJB Keurentjes, W Ligterink, ...
Plant physiology 162 (2), 553-566, 2013
WormQTL—public archive and analysis web portal for natural variation data in Caenorhabditis spp
LB Snoek, KJ Van der Velde, D Arends, Y Li, A Beyer, M Elvin, J Fisher, ...
Nucleic Acids Research, 2012
WormQTLHD—a web database for linking human disease to natural variation data in C. elegans
KJ van der Velde, M de Haan, K Zych, D Arends, LB Snoek, ...
Nucleic acids research 42 (D1), D794-D801, 2014
qtl: Tools for Analayzing QTL Experiments
KW Broman, H Wu, G Churchill, S Sen, B Yandell
R package version, 1.15-15, 2010
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
MA Swertz, KJ van der Velde, BM Tesson, RA Scheltema, D Arends, ...
Genome Biology 11 (3), 1-15, 2010
An integrated systems genetics and omics toolkit to probe gene function
H Li, X Wang, D Rukina, Q Huang, T Lin, V Sorrentino, H Zhang, ...
Cell systems 6 (1), 90-102. e4, 2018
The expanded BXD family of mice: A cohort for experimental systems genetics and precision medicine
DG Ashbrook, D Arends, P Prins, MK Mulligan, S Roy, EG Williams, ...
BioRxiv, 672097, 2019
Whole genome population genetics analysis of Sudanese goats identifies regions harboring genes associated with major traits
SA Rahmatalla, D Arends, M Reissmann, AS Ahmed, K Wimmers, ...
BMC genetics 18 (1), 1-10, 2017
Feeding of Enterococcus faecium NCIMB 10415 leads to intestinal miRNA-423-5p-induced regulation of immune-relevant genes
S Kreuzer-Redmer, JC Bekurtz, D Arends, R Bortfeldt, B Kutz-Lohroff, ...
Applied and environmental microbiology 82 (8), 2263-2269, 2016
Regulatory Network of Secondary Metabolism in Brassica rapa: Insight into the Glucosinolate Pathway
D Pino Del Carpio, RK Basnet, D Arends, K Lin, RCH De Vos, D Muth, ...
PLoS One 9 (9), e107123, 2014
Netgwas: an R package for network-based genome-wide association studies
P Behrouzi, D Arends, EC Wit
arXiv preprint arXiv:1710.01236, 2017
GeneNetwork: framework for web-based genetics
Z Sloan, D Arends, KW Broman, A Centeno, N Furlotte, H Nijveen, L Yan, ...
Journal of Open Source Software 1 (2), 25, 2016
A platform for experimental precision medicine: the extended BXD mouse family
DG Ashbrook, D Arends, P Prins, MK Mulligan, S Roy, EG Williams, ...
Cell Systems 12 (3), 235-247. e9, 2021
Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs
C Durrant, MA Swertz, R Alberts, D Arends, S Möller, R Mott, P Prins, ...
Briefings in Bioinformatics, 2011
Finding the optimal imputation strategy for small cattle populations
P Korkuć, D Arends, GA Brockmann
Frontiers in genetics 10, 52, 2019
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Articles 1–20